Jmol Documentation
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Jmol Documentation
Table of Contents
1.
Introduction
2.
Command Line Options
Other user options
-Duser.language
-Ddisplay.speed
-Xmx
Developers/Debug Options
-Dcdk.debugging
-DJmolConsole
3.
Menu description
The File menu
Open
Recent Files...
Script...
Save As...
Export
Print
Exit
The Edit menu
Select All
Deselect All
Make Crystal...
Atom Properties...
Preferences...
The Display menu
Atom Style
Bond Style
Atom Labels
Atom Coloring
Wireframe Rotation
Perspective Depth
Axes
Bounding Box
Hydrogens
Vectors
Measurements
The View menu
Front/Top/Bottom/Right/Left
Transform
Define center
The Measure menu
Distance...
Angle...
Dihedral...
Delete Distance/Angle/Dihedral
Clear all Distances/Angles/Dihedrals
Clear all Measurements...
View Measurement List...
The Extras menu
Animate...
Vibrate...
Graph...
Crystal Properties...
The Help menu
About Jmol
User Guide
What's New
Jmol Console
4.
RasMol/Chime Scripts
RasMol/Chime commands
animate play|revplay|rewind|next|prev|nextwrap|prevwrap|frame
background <color>
center {<expression>}
color {<object>} <color>
cpk <boolean> | cpk <value>
define <variable> <expression>
delay {<delaytime>}
echo <string>
exit
label <boolean> | label <string>
load {<format>} <filename | url>
loop {<delaytime>}
monitor <number> <number> {<number>} {<number>}
move <xRot> <yRot> <zRot> <zoom> <xTrans> <yTrans> <zTrans> <slab> <time> {<FPS>} {<MaxAccel>}
quit
refresh
reset
restrict <expression>
rotate <axis> <value>
script <filename | url>
select {<expression>}
set <parameter> {<value>}
slab <boolean> | <percentage>
spacefill {<boolean>} | <value>
translate <axis> <value>
wireframe {<boolean>} | <value>
zap
zoom {<boolean>} | <percentage>
Set Parameters
set axes on | off
set background <color>
set bondmode and | or
set bonds on | off
set boundbox on | off
set display normal | selected
set fontsize <value>
set hetero on | off
set hydrogen on | off
set monitor on | off
Atom Expressions
boolean operators
comparison operators
within(<distance>, <set>)
Predefined Sets
Rendering Commands
set shadows
Export Commands
Misc. Commands
Colour Schemes
Parameters
shadows
autorefresh